Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0043 | PA1028 | PA0043 | PA1028 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable oxidoreductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.883 |
| PA0043 | cupC1 | PA0043 | PA0992 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.690 |
| PA1028 | PA0043 | PA1028 | PA0043 | Probable oxidoreductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.883 |
| PA1028 | cupC1 | PA1028 | PA0992 | Probable oxidoreductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.696 |
| cupA1 | cupA2 | PA2128 | PA2129 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.982 |
| cupA1 | cupA5 | PA2128 | PA2132 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.988 |
| cupA1 | cupB1 | PA2128 | PA4086 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable fimbrial subunit CupB1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.729 |
| cupA1 | cupB4 | PA2128 | PA4083 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupB4; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.923 |
| cupA1 | cupB6 | PA2128 | PA4081 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupB6; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.704 |
| cupA1 | cupC1 | PA2128 | PA0992 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.706 |
| cupA1 | cupC2 | PA2128 | PA0993 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupC2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.894 |
| cupA1 | cupC3 | PA2128 | PA0994 | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.904 |
| cupA2 | cupA1 | PA2129 | PA2128 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.982 |
| cupA2 | cupA5 | PA2129 | PA2132 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.873 |
| cupA2 | cupB1 | PA2129 | PA4086 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable fimbrial subunit CupB1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.770 |
| cupA2 | cupB6 | PA2129 | PA4081 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupB6; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.632 |
| cupA2 | cupC1 | PA2129 | PA0992 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupC1; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.591 |
| cupA2 | cupC3 | PA2129 | PA0994 | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Usher CupC3; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.974 |
| cupA5 | cupA1 | PA2132 | PA2128 | Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.988 |
| cupA5 | cupA2 | PA2132 | PA2129 | Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.873 |
page 1 of 4